| Sequences |
| Enter a name for the sequence :
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DNA or
protein sequence ?
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Enter or paste the sequence :
or choose a file with the sequence(s) in it :
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Check if you entered more than one sequence above :
In this case, specify the string separating the sequences :
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| Parameters for the DNA to protein translation |
| Frame :
Complement :
Possible start codons :
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| Min. length for resulting proteins :
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| Parameters for the proteasomal cleavage prediction |
Min.
and max.
length of fragments
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Min. probability for
cleavage after a single residue
cleavage of a fragment
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Use FRAGPREDICT routines to calculate
the cleavages after a single residue
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Use PAProC routines
Which proteasome species should be used ?
Human proteasome :
wild type I
wild type III
|
| Parameters for the MHC binding prediction |
MHC-type :
(S: supported by SYFPEITHI; B: supported by BIMAS)
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Choose a mer :
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Minimum binding score :
SYFPEITHI:
BIMAS:
Matrices to be used :
SYFPEITHI
BIMAS
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| Presentation parameters |
| Results sorted by
epitope position,
cleavage probability,
binding score or
overall score
|
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Weight for the cleavage probability :
Weight for the binding score = 10 - (weight for the cleavage prob.)
|
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Limit the number of results by
(0 for unlimited number)
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Your login name :
Your password :
The results will be send to the email address you filled into the registration form !
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Calculate combinations of FRAGPREDICT/PAPROC and SYFPEITHI/BIMAS at once:
FRAGPREDICT/PAPROC with SYFPEITHI (= 2 results)
FRAGPREDICT/PAPROC with BIMAS (= 2 results)
FRAGPREDICT with SYFPEITHI/BIMAS (= 2 results)
PAPROC with SYFPEITHI/BIMAS (= 2 results)
FRAGPREDICT/PAPROC with SYFPEITHI/BIMAS (= 4 results)
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Merge all results into one
(one additional result)
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