Max-Planck-Institute for Infection Biology

MAPPP

Prediction query

Charite : Institute for Biochemistry
Sequences
Enter a name for the sequence : DNA or protein sequence ?
Enter or paste the sequence :

or choose a file with the sequence(s) in it :
Check if you entered more than one sequence above :
In this case, specify the string separating the sequences :
Parameters for the DNA to protein translation
Frame :     Complement :       Possible start codons :
Min. length for resulting proteins :
Parameters for the proteasomal cleavage prediction
Min. and max.
length of fragments
Min. probability for
cleavage after a single residue
cleavage of a fragment
Use FRAGPREDICT routines to calculate
the cleavages after a single residue
Use PAProC routines
Which proteasome species should be used ?
Human proteasome :
wild type I
wild type III
Parameters for the MHC binding prediction
MHC-type :

(S: supported by SYFPEITHI; B: supported by BIMAS)
Choose a mer :
Minimum binding score :
SYFPEITHI:
BIMAS:      

Matrices to be used :
SYFPEITHI   BIMAS  
Presentation parameters
Results sorted by epitope position,   cleavage probability,   binding score   or   overall score
Weight for the cleavage probability :   Weight for the binding score = 10 - (weight for the cleavage prob.)
Limit the number of results by (0 for unlimited number)
Your login name :     Your password :
The results will be send to the email address you filled into the registration form !
Calculate combinations of FRAGPREDICT/PAPROC and SYFPEITHI/BIMAS at once:
    FRAGPREDICT/PAPROC with SYFPEITHI (= 2 results)
    FRAGPREDICT/PAPROC with BIMAS (= 2 results)
    FRAGPREDICT with SYFPEITHI/BIMAS (= 2 results)
    PAPROC with SYFPEITHI/BIMAS (= 2 results)
    FRAGPREDICT/PAPROC with SYFPEITHI/BIMAS (= 4 results)
Merge all results into one
    (one additional result)