Selected relevant publications
1. Denis R. Chopera, Laura A. Cotton, Alexander Zawaira, Jaclyn K. Mann, Nobubelo Ngandu, Roman Ntale, Jonathan M. Carlson, Koleka Mlisana, Zenda Woodman, Debra de Assis Rosa, Eric Martin, Toshiyuki Miura, Florencia Pereyra, Bruce D. Walker, Clive M. Gray, Darren P. Martin, Thumbi Ndung’u, Mark A. Brockman, Salim Abdool Karim, Zabrina L. Brumme, Carolyn Williamson and the CAPRISA 002 Study Team. Intersubtype differences in the effect of a rare p24 Gag mutation on HIV-1 replicative fitness. Journal of Virology 2012 Sep 26. [Epub ahead of print].
2. Derseree Archary, Rong Rong, Michelle L Gordon, Saikat Boliar, Maphuti Madiga, Elin S Gray, Anne-Sophie Dugast, Tandile Hermanus, Philip JR Goulder, Hoosen M Coovadia, Lise Werner, Lynn Morris, Galit Alter, Cynthia A Derdeyn and Thumbi Ndung’u. Characterization of anti-HIV-1 neutralizing and binding antibodies in chronic HIV-1 subtype C infection. Virology Sep 17. pii: S0042-6822(12)00414-X. doi: 10.1016/j.virol.2012.08.033. [Epub ahead of print].
3. Henrik Kloverpris, Mikkel Harndahl, Alasdair Leslie, Jonathan Carlson, Nasreen Ismail, Mary van der Stok, Gary Huang, Fabian Chen, Lynn Riddell, Dewald Steyn, Dominique Goedhals, Cloete van Vuuren, John Frater, Bruce Walker, Mary Carrington, Thumbi Ndung'u, Søren Buus, and Philip Goulder. HIV control through a single nucleotide on the HLA-B locus. Journal of Virology 2012 Aug 15. [Epub ahead of print].
4. Vivek Naranbhai, Marcus Altfeld, Quarraisha Abdool Karim, Thumbi Ndung’u, Salim S Abdool Karim and William H Carr on behalf of the CAPRISA 004 TRAPS Team. Natural Killer cell function in women at high risk for HIV acquisition: Insights from the CAPRISA 004 microbicide trial. AIDS 2012 Sep 10;26(14):1745-1753.
5. Thumbi Ndung’u and Robin A Weiss. On HIV Diversity. AIDS 2012 Jun 19;26(10):1255-60.
6. Jessica E. Mitchell, Shivan Chetty, Pamla Govender, Mona Pillay, Manjeetha Jaggernath, Anne Kasmar, Thumbi Ndung'u, Paul Klenerman, Bruce D. Walker, Victoria O. Kasprowicz. Prospective monitoring reveals dynamic levels of T cell immunity to Mycobacterium tuberculosis in HIV infected individuals. PLoS One 2012;7(6):e37920. Epub 2012 Jun 7.
7. Christina F. Thobakgale, Lena Fadda, Kimberly Lane, Ildiko Toth, Florencia Pereyra, Suzane Bazner, Thumbi Ndung’u, Bruce D. Walker, Eric Rosenberg, Galit Alter, Mary Carrington, Todd Allen and Marcus Altfeld. Frequent and Strong Antibody-Mediated Natural Killer Cell Activation to HIV-1 Env in Individuals with Chronic HIV-1 Infection. Journal of Virology 2012 Jun;86(12):6986-93. Epub 2012 Apr 11.
8. Jonathan M. Carlson, Jennifer Listgarten, Nico Pfeifer, Vincent Tan, Carl Kadie, Bruce D. Walker, Thumbi Ndung'u, Roger Shapiro, John Frater, Zabrina L. Brumme, Philip J. R. Goulder, David Heckerman. Widespread Impact of HLA Restriction on Immune Control and Escape Pathways in HIV-1. Journal of Virology 2012 May;86(9):5230-43. Epub 2012 Feb 29.
9. Marianne Mureithi, Danielle Poole, Vivek Naranbhai, Shabashini Reddy, Nompumelelo Mkhwanazi, Sengeziwe Sibeko, Quarraisha Abdool Karim, Salim Abdool Karim, Thumbi Ndung'u, Marcus Altfeld. Preservation HIV-1-specific CD4+ T IFN-γ cell responses in breakthrough infections following exposure to Tenofovir Gel in the CAPRISA 004 microbicide trial. Journal of Acquired Immune Deficiency Syndromes 2012 Jun 1;60(2):124-127.
10. Jaclyn K. Wright, Vanessa L. Naidoo, Zabrina L. Brumme, Jessica L. Prince, Daniel T. Claiborne, Philip J.R. Goulder, Mark A. Brockman, Eric Hunter, Thumbi Ndung’u. The impact of HLA-B*81-associated mutations in HIV-1 Gag on viral replication capacity. Journal of Virology 2012 Mar;86(6):3193-9. Epub 2012 Jan 11.
11. Jaclyn K. Wright, Zabrina L. Brumme, Boris Julg, Mary van der Stok, Zenele Mncube, Xiaojiang Gao, Jonathan M. Carlson, Philip J.R. Goulder, Bruce D. Walker, Mark A. Brockman, Thumbi Ndung’u. Lack of association between HLA class II alleles and in vitro replication capacities of recombinant viruses encoding HIV-1 subtype C Gag-protease from chronically infected individuals. Journal of Virology 2012 Jan;86(2):1273-6. Epub 2011 Nov 16.
12. Henrik N. Kloverpris, Anette Stryhn, Mikkel Harndahl, Mary van der Stok, Rebecca P. Payne, Philippa C. Matthews, Fabian Chen, Lynn Riddell, Bruce D. Walker, Thumbi Ndung’u, Søren Buus and Philip Goulder. HLA-B*57 micropolymorphism shapes HLA allele-specific epitope immunogenicity, selection pressure and HIV immune control. Journal of Virology 2012 Jan;86(2):919-29. Epub 2011 Nov 16.
13. Ndlovu BG, Danaviah S, Moodley E, Ghebremichael M, Bland R, Viljoen J, Newell M-L, Ndung’u T, and Carr WH. Use of dried blood spots for the determination of genetic variation of IL-10, Killer immunoglobulin-like receptor and HLA class I genes. Tissue Antigens 2012 Feb;79(2):114-22. doi: 10.1111/j.1399-0039.2011.01807.x. Epub 2011 Nov 22.
14. Vanessa B. Kerry, Thumbi Ndung’u, Rochelle P. Walensky, Patrick T. Lee, V. Frederick I. B. Kayanja, and David R. Bangsberg. Managing the Demand for Global Health Education. PLoS Medicine Nov;8(11):e1001118. Epub 2011 Nov 8.
15. Dshanta D. Naicker, Bingxia Wang, Elena Losina, Jennifer Zupkosky, Susan Bryan, Shabashini Reddy, Manjeetha Jaggernath, Mammekwa Mokgoro, Philip J.R. Goulder, Daniel E. Kaufmann, Thumbi Ndung’u. Association of IL-10 Promoter Genetic Variants with the Rate of CD4 T-cell Loss, IL-10 Plasma Levels and Breadth of Cytotoxic T-Cell Lymphocyte Response during Chronic HIV-1 Infection. Clinical Infectious Diseases 2012 Jan;54(2):294-302. Epub 2011 Nov 18.
16. Raabya Rossenkhan, Vladimir Novitsky, Teresa K Sebunya, Jean Leidner, Jose E Hagan, Sikhulile Moyo, Laura Smeaton, Shahin Lockman, Rosemary Musonda, Thumbi Ndung’u, Simani Gaseitsiwe, Ibou Thior, Mompati Mmalane, Joseph Makhema, M. Essex, and Roger Shapiro. Infant Feeding Practices Were Not Associated with Breast Milk HIV-1 RNA Levels in a Randomized Clinical Trial in Botswana. AIDS and Behavior 2012 Jul;16(5):1260-4.
17. Vinod B Patel, Ravesh Singh, Cathy Connolly, Victoria Kasprowicz, Thumbi Ndung’u, Keertan Dheda. Comparative utility of cytokine levels and quantitative RD-1-specific T cell responses for the rapid immunodiagnosis of TB meningitis. Journal of Clinical Microbiology 2011 Nov;49(11):3971-6. Epub 2011 Aug 31.
18. Thumbi Ndung’u. TRIM E3 ligases in HIV-1 infection- can these intrinsic immunity factors be harnessed for novel antiviral strategies? Virulence 2011 Jul-Aug;2(4):360-6. Epub 2011 Jul 1. Review.
19. Taryn N. Green, Mohendran Archary, Michelle L. Gordon, Nagavelli Padayachi, Yolanda Lie, Elizabeth D. Anton, Jacqueline D. Reeves, Anneke Grobler, Raziya Bobat, Hoosen Coovadia and Thumbi Ndung'u. Drug Resistance and Coreceptor Usage in HIV-1 Subtype C Infected Children Initiating or Failing HAART in South Africa. AIDS Research and Human Retroviruses 2011 Aug 5. [Epub ahead of print].
20. Victoria O Kasprowicz, Jessica E Mitchell, Shivan Chetty, Pamla Govender, Kuan-Hsiang Gary Huang, Helen A Fletcher, Daniel P Webster, Sebastian Brown, Anne Kasmar, Kerry Millington, Cheryl L Day, Nompumelelo Mkhwanazi, Cheryl McClurg, Fundisiwe Chonco, Ajit Lalvani, Bruce D Walker, Thumbi Ndung'u, Paul Klenerman. A molecular assay for sensitive detection of pathogen-specific T-cells. PLoS One 2011;6(8):e20606. Epub 2011 Aug 11.
21. Paradise Madlala, Rik Gijsbers, Frauke Christ, Anneleen Hombrouck, Lise Werner, Koleka Mlisana, Ping An, Salim S. Abdool Karim, Cheryl A. Winkler, Zeger Debyser and Thumbi Ndung’u. Association of Polymorphisms in the LEDGF/p75 Gene (PSIP1) with Susceptibility to HIV-1 Infection and Disease Progression. AIDS 2011 Sep 10;25(14):1711-9.
22. Ashika Singh, Henry Sunpath, Taryn N. Green, Nagavelli Padayachi, Keshni Hiramen, Yolanda Lie, Elizabeth D. Anton, Richard Murphy, Jacqueline D. Reeves, Daniel R. Kuritzkes, Thumbi Ndung’u. Drug Resistance and Viral Tropism in HIV-1 Subtype C-Infected Patients in KwaZulu-Natal, South Africa: Implications for Future Treatment Options. Journal of Acquired Immune Deficiency Syndromes 2011 Nov 1;58(3):233-240.
23. W.D. Francois Venter, Thumbi Ndung’u, and Quarraisha Abdool Karim. Case 15-2011: A 19-Year-Old South African Woman with Headache, Fatigue, and Vaginal Discharge. New England Journal of Medicine 2011 May 19;364(20):1956-64.
24. Mopo Radebe, Kriebashnie Nair, Fundisiwe Chonco, Karen Bishop, Jaclyn K. Wright, Mary van der Stok, Ingrid V. Bassett, Zenele Mncube, Marcus Altfeld, Bruce D. Walker and Thumbi Ndung’u. Limited immunogenicity of HIV CD8+ T-cell epitopes in acute clade C virus infection. Journal of Infectious Diseases 2011 Sep; 204 (5): 768-78.
25. Zaza M. Ndhlovu, Alicja Piechocka-Trocha, Seanna Vine, Ashley McMullen, Koofthethile C. Kegakilwe, Phillip J. Goulder, Thumbi Ndung’u, Dan H. Barouch and Bruce D. Walker. Mosaic HIV-1 Gag Antigens Can Be Processed and Presented to Human HIV-Specific CD8+ T Cells. Journal of Immunology 2011 Jun 15;186(12):6914-24. Epub 2011 May 16.
26. Hannah O. Ajoge, Michelle L. Gordon, Sani Ibrahim, Oladapo S. Shittu, Thumbi Ndung’u, Stephen O. Olonitola. Drug resistance pattern of HIV-1 isolates sampled in 2007 from therapy-naive pregnant women in North-Central Nigeria. AIDS Research and Human Retroviruses 2012 Jan;28(1):115-8. Epub 2011 Jun 17.
27. Kuan-Hsiang Gary Huang, Dominique Goedhals, Jonathan M. Carlson, Mark Brockman, Swati Mishra, Zabrina Brumme, Stephen Hickling, Christopher Tang, Chris Seebregts, David Heckerman, Thumbi Ndung’u, Bruce Walker, Paul Klenerman, Dewald Steyn, Philip Goulder, Rodney Phillips, Cloete van Vuuren, Bloemfontein-Oxford Collaborative Group, John Frater. Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations. PLoS One 2011 Apr 22;6(4):e19018.
28. Vladimir Novitsky, Thumbi Ndung’u, Rui Wang, Hermann Bussmann, Fundisiwe Chonco, Joseph Makhema, Victor DeGruttola, Bruce D. Walker and Max Essex. Extended High Viremics: A Substantial Fraction of Individuals Maintain High Plasma Viral RNA Levels after Acute HIV-1 Subtype C Infection. AIDS 2011 Jul 31;25(12):1515-22.
29. Hannah O. Ajoge, Michelle L. Gordon, Tulio de Oliveira, Taryn N. Green, Sani Ibrahim, Oladapo S. Shittu, Stephen O. Olonitola, Aliyu A. Ahmad, Thumbi Ndung'u. Genetic characteristics, coreceptor usage potential and evolution of Nigerian HIV-1 subtype G and CRF02_AG isolates. PLoS One 2011 Mar 14;6(3):e17865.
30. Christina F. Thobakgale, Hendrik Streeck, Nompumelelo Mkhwanazi, Zenele Mncube, Lungile Maphumulo, Fundisiwe Chonco, Andrew Prendergast, Gareth Tudor-Williams, Bruce D. Walker, Philip J. R. Goulder, Marcus Altfeld, and Thumbi Ndung’u. CD8+ T Cell Polyfunctionality Profiles in Progressive and Non-progressive Paediatric HIV-1 Infection. AIDS Research and Human Retroviruses 2011 Sep;27(9):1005-12. Epub 2011 Mar 21.
31. Veron Ramsuran, Hemant Kulkarni, Weijing He, Koleka Mlisana, Edwina Wright, Lise Werner, John Castiblanco-Quinche, Rahul Dhanda, Tuan Le, Matthew Dolan, Weihua Guan, Robin Weiss, Robert Clark, Salim Abdool Karim, Sunil K. Ahuja, Thumbi Ndung'u. Duffy-Null-Associated Low Neutrophil Counts Influence HIV-1 Susceptibility in High-Risk South African Black Women. Clinical Infectious Diseases 2011 May;52(10):1248-56.
32. Jaclyn K. Wright, Vladimir Novitsky, Mark A. Brockman, Zabrina L. Brumme, Chanson J. Brumme, Jonathan M. Carlson, David Heckerman, Bingxia Wang, Elena Losina, Mopo Leshwedi, Mary van der Stok, Lungile Maphumulo, Nompumelelo Mkhwanazi, Fundisiwe Chonco, Philip J.R. Goulder, Max Essex, Bruce D. Walker, Thumbi Ndung’u. Influence of Gag-Protease-Mediated Replication Capacity on Disease Progression in Individuals Recently Infected with HIV-1 Subtype C. Journal of Virology 2011 Apr;85(8):3996-4006. Epub 2011 Feb 2.
33. Vivek Naranbhai, Pat Bartman, Dudu Ndlovu, Pamela Ramkalawon, Thumbi Ndung’u, Douglas Wilson, Marcus Altfeld, William H Carr. Impact of blood processing variations on Natural Killer cell frequency, activation, chemokine receptor expression and function. Journal of Immunological Methods 2011 Mar 7;366(1-2):28-35. Epub 2011 Jan 19.
34. Boris Julg, Eshia S. Moodley, Ying Qi, Danni Ramduth, Shabashini Reddy, Zenele Mncube, Xiaojiang Gao, Philip Goulder, Roger Detels, Thumbi Ndung’u, Bruce D. Walker and Mary Carrington. Possession of HLA class II DRB1*1303 associates with reduced viral loads in chronic HIV-1 clade C and B infection. Journal of Infectious Diseases 2011 Mar;203(6):803-9. Epub 2011 Jan 21.
35. Derseree Archary, Michelle L. Gordon, Taryn N. Green, Hoosen M. Coovadia, Philip J.R. Goulder and Thumbi Ndung'u. HIV‑1 subtype C envelope characteristics associated with divergent rates of chronic disease progression. Retrovirology 2010 Nov 4;7(1):92. [Epub ahead of print].
36. Ravesh Singh, Gaurav Gaiha, Lise Werner, Kevin McKim, Koleka Mlisana, Jeremy Luban, Bruce D. Walker, Salim S. Abdool Karim, Abraham L. Brass, Thumbi Ndung’u, and the CAPRISA Acute Infection Study Team. Association of TRIM22 with the Type 1 Interferon Response and Viral Control during Primary HIV-1 Infection. Journal of Virology 2011 Jan;85(1):208-16. Epub 2010 Oct 27.
37. Marianne W. Mureithi, Kristen Cohen, Ramona Moodley, Danielle Poole, Zenele Mncube, Anne Kasmar, D. Branch Moody, Philip Goulder, Bruce D. Walker, Marcus Altfeld and Thumbi Ndung’u. Impairment of CD1d-restricted Natural Killer T cells in chronic HIV-1 clade C infection. AIDS Research and Human Retroviruses 2011 May;27(5):501-9. Epub 2010 Dec 13.
38. Jaclyn K. Wright, Zabrina L. Brumme, Jonathan M. Carlson, David Heckerman, Carl M. Kadie, Chanson J. Brumme, Bingxia Wang, Elena Losina, Toshiyuki Miura, Fundisiwe Chonco, Mary van der Stok, Zenele Mncube, Karen Bishop, Philip J.R. Goulder, Bruce D. Walker, Mark A. Brockman, Thumbi Ndung’u. Gag-Protease-Mediated Replication Capacity in HIV-1 Subtype C Chronic Infection: Associations with HLA Type and Clinical Parameters. Journal of Virology 2010 Oct;84(20):10820-31. Epub 2010 Aug 11.
39. Morgane Rolland, Jonathan M. Carlson, Wenjie Deng, Christine M. Rousseau, Dana N. Raugi, Brandon S. Maust, Hoosen Coovadia, Thumbi Ndung'u, Philip J.R. Goulder, Bruce D. Walker, Christian Brander, David E. Heckerman and James I. Mullins. Amino-acid co-variation in HIV-1 gag subtype C: HLA-mediated selection pressure and compensatory dynamics. PLoS One 2010 Sep 1;5(9). pii: e12463.
40. Tammy M Meyers and Thumbi Ndung'u. Case 18-2010. A 7-year-old boy with elevated HIV RNA levels despite antiretroviral medications. New England Journal of Medicine 2010 Jun 17; 362(24):2305-12.
41. Alasdair Leslie, Phillipa C Matthews, Jennifer Listgarten, Jonathan Carslon, Carl Kadie, Thumbi Ndung’u, Christian Brander, Hoosen Coovadia, Bruce D Walker, David Heckerman and Philip J R Goulder. Additive contribution of HLA class I alleles in the immune control of HIV-1 infection. Journal of Virology 2010 Oct;84(19):9879-88. Epub 2010 Jul 21.
42. Nompumelelo Mkhwanazi, Christina F. Thobakgale, Mary van der Stok, Shabashini Reddy, Zenele Mncube, Fundisiwe Chonco, Bruce D. Walker, Marcus Altfeld, Philip J.R. Goulder, Thumbi Ndung’u. Immunodominant HIV-1-Specific HLA-B- and HLA-C-Restricted CD8+ T-cells do not differ in Polyfunctionality. Virology 2010 Sep 30;405(2):483-91. Epub 2010 Jul 17.
43. Marianne W. Mureithi, J. Judy Chang, Jeffrey D. Lifson, Thumbi Ndung’u, Marcus Altfeld. Exposure to HIV-1 encoded TLR8 ligands enhances monocytes response to microbial encoded TLR2/4 ligands. AIDS 2010 2010 Jul 31;24(12):1841-8.
44. Vinod B Patel, Ravesh Singh, Cathy Connolly, Yacoob Coovadia, Abdool KC Peer, Priyashini Parag, Victoria Kasprowicz, Alimuddin Zumla, Thumbi Ndung’u, Keertan Dheda. Cerebrospinal T cell responses aid the diagnosis of tuberculous meningitis in a HIV and TB endemic population. American Journal of Respiratory and Critical Care Medicine 2010 Aug 15;182(4):569-77. Epub 2010 May 4.
45. Julg B, Williams KL, Reddy S, Bishop K, Qi Y, Carrington M, Goulder PJ, Ndung’u T, Walker BD. Enhanced anti-HIV functional activity associated with Gag-specific CD8 T-cell responses. Journal of Virology 2010 Jun; 84 (11):5540-9. Epub 2010 Mar 24.
46. Anju Bansal, Jonathan Carlson, Jiyu Yan, Olusimidele T. Akinsiku, Malinda Schaefer, Steffanie Sabbaj, Anne Bet, David Levy, Sonya Heath, Jianming Tang, Richard A. Kaslow, Bruce D. Walker, Thumbi Ndung’u, Philip J. Goulder, David Heckerman, Eric Hunter, and Paul A. Goepfert. CD8 T cell and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription. Journal of Experimental Medicine 2010; 207 (1): 51-9, S1-3.
47. Kavidha Reddy, Cheryl A. Winkler, Lise Werner, Koleka Mlisana, Salim S. Abdool Karim, Thumbi Ndung’u, and the CAPRISA Acute Infection Study Team. APOBEC3G Expression is Dysregulated in Primary HIV-1 Infection and Polymorphic Variants Influence CD4+ T Cell Counts and Plasma Viral Load. AIDS 2010; 24 (2):195-204.
48. Julia G. Prado, Andrew Prendergast, Christina Thobakgale, Claudia Molina, Gareth Tudor-Williams, Thumbi Ndung’u, Bruce D. Walker and Philip Goulder. Replicative Capacity of Mother-to-child transmitted virus is associated with paediatric HIV-1 disease progression. Journal of Virology 2010; 84 (1):492-502.
49. Ashika Singh, Taryn Page, Penny L. Moore, Rachel L. Allgaier, Keshni Hiramen, Hoosen M. Coovadia, Bruce D. Walker, Lynn Morris, Thumbi Ndung’u. Functional and Genetic Analysis of Coreceptor Usage by Dualtropic HIV-1 Subtype C Isolates. Virology 2009; 392 (1): 56-67.
50. Christina F Thobakgale, Andrew Prendergast, Hayley Crawford, Nompumelelo Mkhwanazi, Danni Ramduth , Sharon Reddy, Claudia Molina , Zenele Mncube, Alasdair Leslie, Julia Prado, Fundi Chonco, Wendy Mphatshwe, Gareth Tudor-Williams, Prakash Jeena, Natasha Blanckenberg, Krista Dong, Photini Kiepiela, Hoosen Coovadia, Thumbi Ndung’u, Bruce D Walker, and Philip J R Goulder. Impact of HLA in Mother and Child on Paediatric HIV-1 Disease Progression. Journal of Virology 2009; 83 (19): 10234-44.
51. Zabrina Brumme, Bingxia Wang, Kriebashne Nair, Chanson Brumme, Chantal de Pierres, Shabashini Reddy, Boris Julg, Eshia Moodley, Christina Thobakgale, Zhigang Lu, Mary van der Stok, Karen Bishop, Zenele Mncube, Fundisiwe Chonco, Yuko Yuki, Nicole Frahm, Christian Brander, Mary Carrington, Kenneth Freedberg, Photini Kiepiela, Philip Goulder, Bruce Walker, Thumbi Ndung’u, Elena Losina. Impact of select immunologic and virologic biomarkers on CD4 decline in chronic HIV-1 subtype C infection: Results from Sinikithemba longitudinal population-based cohort, Durban, South Africa. Clinical Infectious Diseases 2009; 49: 956-64.
52. Dshanta D. Naicker, Lise Werner, Emil Kormuth, Jo-Ann Passmore, Koleka Mlisana, Salim Abdool Karim, Thumbi Ndung’u, and the CAPRISA Acute Infection Study Team. Interleukin-10 Promoter Polymorphisms Influence HIV-1 Susceptibility and Primary HIV-1 Pathogenesis. Journal of Infectious Diseases 2009; 200 (3): 448-452.
53. Shamman Sewram, Ravesh Singh, Emil Kormuth, Lise Werner, Koleka Mlisana, SS Abdool Karim, Thumbi Ndung’u, and the CAPRISA Acute Infection Study Team. Human TRIM5α Expression Levels and Reduced Susceptibility to Human Immunodeficiency Virus Type 1 Infection. Journal of Infectious Diseases 2009; 199 (11): 1657-1663.
54. Boris Julg, Shabashini Reddy, Mary van der Stok, Smita Kulkarni, Ying Qi, Sara Bass, Bert Gold, Michael A. Nalls, George W. Nelson, Bruce D. Walker, Mary Carrington, and Thumbi Ndung’u. Lack of Duffy Antigen Receptor for Chemokines: No Influence on HIV Disease Progression in an African Treatment-Naïve Population. Cell Host and Microbe 2009; 5 (5): 413-5.
55. Hayley Crawford, Wendy Lumm, Alasdair Leslie, Malinda Schaefer, Debrah Boeras, Julia G Prado, Jainming Tang, Paul Farmer, Thumbi Ndung’u, Shabir Lakhi, Jill Gillmour, Paul Goepfert, Bruce D Walker, Richard Kaslow, Joseph Mulenga, Susan Allen, Philip J R Goulder, Eric Hunter. Evolution of HLA-B*5703 HIV-1 Escape Mutations in HLA-B*5703-Positive Individuals and their Transmission Recipients. Journal of Experimental Medicine 2009; 206 (4): 909-21.
56. Yuka Kawashima, Katja Pfafferott, John Frater, Philippa Matthews, Rebecca Payne, Marylyn Addo, Hiroyuki Gatanaga, Mamoru Fujiwara, Atsuko Hachiya, Hirokazu Koizumi, Nozomi Kuse, Shinichi Oka, Anna Duda, Andrew Prendergast, Hayley Crawford, Alasdair Leslie, Zabrina Brumme, Chanson Brumme, Todd Allen, Christian Brander, Richard Kaslow, James Tang, Eric Hunter, Susan Allen, Joseph Mulenga, Songee Branch, Tim Roach, Mina John, Simon Mallal, Anthony Ogwu, Roger Shapiro, Julia G. Prado, Sarah Fidler, Jonathan Weber, Oliver G. Pybus, Paul Klenerman, Thumbi Ndung’u, Rodney Phillips, David Heckerman, P. Richard Harrigan, Bruce D. Walker, Masafumi Takiguchi, Philip Goulder. Adaptation of HIV-1 to Human Leukocyte Antigen Class 1. Nature 2009; 458 (7238):641-5.