Publications of Cynthia M. Sharma

Sharma, C. M.; Papenfort, K.; Pernitzsch, S. R.; Mollenkopf, H.-J.; Hinton, J. C.D.; Vogel, J.: Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Molecular Microbiology 81 (5), pp. 1144 - 1165 (2011)

Papenfort, K.; Bouvier, M.; Mika, F.; Sharma, C. M.; Vogel, J.: Evidence for an autonomous 5 ' target recognition domain in an Hfq-associated small RNA. Proceedings of the National Academy of Sciences of the United States of America 107 (47), pp. 20435 - 20440 (2010)

Bohn, C.; Rigoulay, C.; Chabelskaya, S.; Sharma, C. M.; Marchais, A.; Skorski, P.; Borezée-Durant, E.; Barbet, R.; Jacquet, E.; Jacq, A. et al.; Gautheret, D.; Felden, B.; Vogel, J.; Bouloc, P.: Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism. Nucleic Acids Research 38 (19), pp. 6620 - 6636 (2010)

Irnov, I.; Sharma, C. M.; Vogel, J.; Winkler, W. C.: Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Research 38 (19), pp. 6637 - 6651 (2010)

Sharma, C. M.; Hoffmann, S.; Darfeuille, F.; Reignier, J.; Findeiß, S.; Sittka, A.; Chabas, S.; Reiche, K.; Hackermüller, J.; Reinhardt, R. et al.; Stadler, P. F.; Vogel, J.: The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464 (7286), pp. 250 - 255 (2010)

Albrecht, M.; Sharma, C. M.; Reinhardt, R.; Vogel, J.; Rudel, T.: Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome. Nucleic Acids Research 38 (3), pp. 868 - 877 (2010)

Jäger, D.; Sharma, C. M.; Thomsen, J.; Ehlers, C.; Vogel, J.; Schmitz, R. A.: Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability. Proceedings of the National Academy of Sciences of the United States of America 106 (51), pp. 21878 - 21882 (2009)

Berghoff, B. A.; Glaeser, J.; Sharma, C. M.; Vogel, J.; Klug, G.: Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides. Molecular Microbiology 74 (6), pp. 1497 - 1512 (2009)

Sharma, C. M.; Vogel, J.: Experimental approaches for the discovery anal characterization of regulatory small RNA. Current Opinion in Microbiology 12 (5), pp. 536 - 546 (2009)

Hoffmann, S.; Otto, C.; Kurtz, S.; Sharma, C. M.; Khaitovich, P.; Vogel, J.; Stadler, P. F.; Hackermüller, J.: Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures. PLoS Computational Biology 5 (9), e1000502 (2009)

Sittka, A.; Sharma, C. M.; Rolle, K.; Vogel, J.: Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. RNA Biology 6 (3), pp. 266 - 275 (2009)

Bouvier, M.; Sharma, C. M.; Mika, F.; Nierhaus, K. H.; Vogel, J.: Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation. Molecular Cell 32 (6), pp. 827 - 837 (2008)

Sittka, A.; Lucchini, S.; Papenfort, K.; Sharma, C. M.; Rolle, K.; Binnewies, T. T.; Hinton, J. C. D.; Vogel, J.: Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq. PLoS Genetics 4 (8), e1000163 (2008)

Sharma, C. M.; Darfeuille, F.; Plantinga, T. H.; Vogel, J.: A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes & Development 21 (21), pp. 2804 - 2817 (2007)

Vogel, J.; Sharma, C. M.: How to find small non-coding RNAs in bacteria. Biological Chemistry 386 (12), pp. 1219 - 1238 (2005)