Publications

Lalande, L. D.; Lummaa, V.; Aung, H. H.; Htut, W.; Nyein, U. K.; Berger, V.; Briga, M.: Sex-specific body mass ageing trajectories in adult Asian elephants. J Evol Biol 35 (5), pp. 752 - 762 (2022)

Sigal, A.; Milo, R.; Jassat, W.: Estimating disease severity of Omicron and Delta SARS-CoV-2 infections COMMENT. Nature Reviews Immunology 22 (5), pp. 267 - 269 (2022)

LaVerriere, E.; Schwabl, P.; Carrasquilla, M.; Taylor, A. R.; Johnson, Z. M.; Shieh, M.; Panchal, R.; Straub, T. J.; Kuzma, R.; Watson, S. et al.; Buckee, C. O.; Andrade, C. M.; Portugal, S.; Crompton, P. D.; Traore, B.; Rayner, J. C.; Corredor, V.; James, K.; Cox, H.; Early, A. M.; MacInnis, B. L.; Neafsey, D. E.: Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: A malaria case study. Molecular Ecology Resources (2022)

Reuschl, A.-K.; Mesner, D.; Shivkumar, M.; Whelan, M. V. X.; Pallett, L. J.; Guerra-Assunção, J. A.; Madansein, R.; Dullabh, K. J.; Sigal, A.; Thornhill, J. P. et al.; Herrera, C.; Fidler, S.; Noursadeghi, M.; Maini, M. K.; Jolly, C.: HIV-1 Vpr drives a tissue residency-like phenotype during selective infection of resting memory T cells. Cell Reports 39 (2), 110650 (2022)

Scheepers, C.; Everatt, J.; Amoako, D. G.; Tegally, H.; Wibmer, C. K.; Mnguni, A.; Ismail, A.; Mahlangu, B.; Lambson, B. E.; Martin, D. P. et al.; Wilkinson, E.; San, J. E.; Giandhari, J.; Manamela, N.; Ntuli, N.; Kgagudi, P.; Cele, S.; Richardson, S. I.; Pillay, S.; Mohale, T.; Ramphal, U.; Naidoo, Y.; Khumalo, Z. T.; Kwatra, G.; Gray, G.; Bekker, L.-G.; Madhi, S. A.; Baillie, V.; Voorhis, W. C. V.; Treurnicht, F. K.; Venter, M.; Mlisana, K.; Wolter, N.; Sigal, A.; Williamson, C.; Hsiao, N.-Y.; Msomi, N.; Maponga, T.; Preiser, W.; Makatini, Z.; Lessells, R.; Moore, P. L.; de Oliveira, T.; von Gottberg, A.; Bhiman, J. N.: Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage. Nature Communications 13 (1), 1976 (2022)

Ninnemann, J.; Winsauer, C.; Bondareva, M.; Kühl, A. A.; Lozza, L.; Durek, P.; Lissner, D.; Siegmund, B.; Kaufmann, S. H.; Mashreghi, M.-F. et al.; Nedospasov, S. A.; Kruglov, A. A.: TNF hampers intestinal tissue repair in colitis by restricting IL-22 bioavailability. Mucosal immunology: official journal of the Society for Mucosal Immunology (2022)

Kapalczynska, M.; Lin, M.; Maertzdorf, J.; Heuberger, J.; Muellerke, S.; Zuo, X.; Vidal, R.; Shureiqi, I.; Fischer, A.-S.; Sauer, S. et al.; Berger, H.; Kidess, E.; Mollenkopf, H.-J.; Tacke, F.; Meyer, T. F.; Sigal, M.: BMP feed-forward loop promotes terminal differentiation in gastric glands and is interrupted by H. pylori-driven inflammation. Nature Communications 13 (1), 1577 (2022)

Abu-Lubad, M. A.; Helaly, G. F.; Haddadin, W. J.; Jarajreh, D. A. K.; Aqel, A. A.; Al-Zeer, M. A.: Loss of p53 Expression in Gastric Epithelial Cells of Helicobacter pylori-Infected Jordanian Patients. International Journal of Microbiology 2022, 7779770 (2022)

Ogunshola, F. J.; Smidt, W.; Naidoo, A. F.; Nkosi, T.; Ngubane, T.; Khaba, T.; Baiyegunhi, O. O.; Mahlobo, B.; Rasehlo, S.; Ngema, N. et al.; Jajbhay, I.; Dong, K. L.; Ramsuran, V.; Pansegrouw, J.; Ndung'u, T.; Walker, B. D.; de Oliveria, T.; Ndhlovu, Z. M.: Hypermethylation at the CXCR5 gene locus limits trafficking potential of CD81 T cells into B-cell follicles during HIV-1 infection. Blood Adv 6 (6), pp. 1904 - 1916 (2022)

Sigal, A.; Milo, R.; Jassat, W.: Estimating disease severity of Omicron and Delta SARS-CoV-2 infections. Nature Reviews Immunology 22, pp. 267 - 269 (2022)

Bloom, S. M.; Mafunda, N. A.; Woolston, B. M.; Hayward, M. R.; Frempong, J. F.; Abai, A. B.; Xu, J.; Mitchell, A. J.; Westergaard, X.; Hussain, F. A. et al.; Xulu, N.; Dong, M.; Dong, K. L.; Gumbi, T.; Ceasar, F. X.; Rice, J. K.; Choksi, N.; Ismail, N.; Ndung'u, T.; Ghebremichael, M. S.; Relman, D. A.; Balskus, E. P.; Mitchell, C. M.; Kwon, D. S.: Cysteine dependence of Lactobacillus iners is a potential therapeutic target for vaginal microbiota modulation. Nature Microbiology 7, pp. 434 - 450 (2022)

Cronan, M. R.: In the Thick of It: Formation of the Tuberculous Granuloma and Its Effects on Host and Therapeutic Responses. Frontiers in immunology 13, 820134 (2022)

Sfeir, A.; Fishell, G.; Schier, A. F.; Dustin, M. L.; Gan, W.-B.; Joyner, A.; Lehmann, R.; Ron, D.; Roth, D.; Talbot, W. S. et al.; Yelon, D.; Zychlinsky, A.: Basic science under threat: Lessons from the Skirball Institute. Cell 185 (5), pp. 755 - 758 (2022)

Belnoue, E.; Vogelzang, A.; Nieuwenhuizen, N. E.; Krzyzaniak, M. A.; Darbre, S.; Kreutzfeldt, M.; Wagner, I.; Merkler, D.; Lambert, P.-H.; Kaufmann, S. H. E. et al.; Siegrist, C.-A.; Pinschewer, D. D.: Replication-Deficient Lymphocytic Choriomeningitis Virus-Vectored Vaccine Candidate for the Induction of T Cell Immunity against Mycobacterium tuberculosis. International Journal of Molecular Sciences 23 (5) (2022)

Cele, S.; Jackson, L.; Khoury, D. S.; Khan, K.; Moyo-Gwete, T.; Tegally, H.; San, J. E.; Cromer, D.; Scheepers, C.; Amoako, D. G. et al.; Karim, F.; Bernstein, M.; Lustig, G.; Archary, D.; Smith, M.; Ganga, Y.; Jule, Z.; Reedoy, K.; Hwa, S.-H.; Giandhari, J.; Blackburn, J. M.; Gosnell, B. I.; Karim, S. S. A.; Hanekom, W.; NGS-SA, COMMIT-KZN Team; von Gottberg, A.; Bhiman, J. N.; Lessells, R. J.; Moosa, M.-Y. S.; Davenport, M. P.; de Oliveira, T.; Moore, P. L.; Sigal, A.: Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization. Nature 602, pp. 654 - 656 (2022)

Koster, S.; Gurumurthy, R. K.; Kumar, N.; Prakash, P. G.; Dhanraj, J.; Bayer, , S.; Berger, H.; Kurian, S. M.; Drabkina, M.; Mollenkopf, H.-J. et al.; Goosmann, C.; Brinkmann, V.; Nagel, Z.; Mangler, M.; Meyer, T. F.; Chumduri, C.: Modelling Chlamydia and HPV co-infection in patient-derived ectocervix organoids reveals distinct cellular reprogramming. Nature Communications 13 (1) (2022)

Miskolci, V.; Tweed, K. E.; Lasarev, M. R.; Britt, E. C.; Walsh, A. J.; Zimmerman, L. J.; McDougal, C. E.; Cronan, M. R.; Fan, J.; Sauer, J.-D. et al.; Skala, M. C.; Huttenlocher, A.: In vivo fluorescence lifetime imaging of macrophage intracellular metabolism during wound responses in zebrafish. eLife, e66080 (2022)

Humbert, P. O.; Zoranovic Pryjda, T.; Pranjic, B.; Farrell, A.; Fujikura, K.; de Simoes, R. M.; Karim, R.; Kozieradzki, I.; Cronin, S. J. F.; Neely, G. G. et al.; Meyer, T. F.; Hagelkruys, A.; Richardson, H. E.; Penninger, J. M.: TSPAN6 is a suppressor of Ras-driven cancer. Oncogene (2022)

Taha, A.; Bobi, J.; Dammers, R.; Dijkhuizen, R. M.; Dreyer, A. Y.; van Es, A. C. G. M.; Ferrara, F.; Gounis, M. J.; Nitzsche, B.; Platt, S. et al.; Stoffel, M. H.; Volovici, V.; Zoppo, G. J. D.; Duncker, D. J.; Dippel, D. W. J.; Boltze, J.; van Beusekom, H. M. M.: Comparison of Large Animal Models for Acute Ischemic Stroke: Which Model to Use? Stroke (2022)

Cele, S.; Karim, F.; Lustig, G.; San, J. E.; Hermanus, T.; Tegally, H.; Snyman, J.; Moyo-Gwete, T.; Wilkinson, E.; Bernstein, M. et al.; Khan, K.; Hwa, S.-H.; Tilles, S. W.; Singh, L.; Giandhari, J.; Mthabela, N.; Mazibuko, M.; Ganga, Y.; Gosnell, B. I.; Karim, S. S. A.; Hanekom, W.; Voorhis, W. C. V.; Ndung'u, T.; Team, C.-K.; Lessells, R. J.; Moore, P. L.; Moosa, M.-Y. S.; de Oliveira, T.; Sigal, A.: SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escape. Cell Host & Microbe 30 (2) (2022)